Lab Resources
PanglaoDB
scRNA-seq database
Expression Atlas
Gene expression database (species)
Immgen
Gene expression database (immune cells)
cBioPortal
Cancer genomics database of TCGA, NIH data sets, and cell lines.
NetMHC
Epitope predictor
Kaplan-Meier Plots
Assess gene expression in 21 cancer types and association with survival
Tabula Muris
Tabula Muris is a compendium of single cell transcriptome data from the model organism Mus musculus, containing nearly 100,000 cells from 20 organs and tissues. The data allow for direct and controlled comparison of gene expression in cell types shared between tissues, such as immune cells from distinct anatomical locations.
TIDE
Tracking of Indels by DEcomposition (TIDE) is an algorithm that uses 2 paired PCR reactions and 2 paired Sanger sequencing reactions to align a pool of CRISPR=edited sequences to the reference genome and tell you the composition of the edited population.